Survival-associated meQTLs across different cancer types


We identified 23,432 meQTLs associated with patient overall survival across different cancer types at FDR < 0.05.


e.g., "BLCA"
e.g., "rs11600543"


Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
log-rank test p-value
Sample size
Median survival time AA
Median survival time Aa
Median survival time aa
Dispaly
PCPG rs4234207 chr3:194731909 A/G 9.22E-5 178 16.68 20.47 25.97 KM Plot
PCPG rs4238831 chr16:89576663 G/A 0.000207 176 26.78 25.28 19.53 KM Plot
PCPG rs4242285 chr6:150345084 G/A 1.14E-11 177 18.2 24.12 25.77 KM Plot
PCPG rs4245345 chr13:48417877 T/C 5.94E-5 177 2.93 25.17 25.53 KM Plot
PCPG rs4257207 chr16:89947861 T/A 0.000204 173 25.87 20.2 36.37 KM Plot
PCPG rs4266597 chr7:158838419 T/C 0.000217 174 25.53 19.87 41.87 KM Plot
PCPG rs4268793 chr17:80523106 A/G 4.51E-5 177 25.92 19.72 7.2 KM Plot
PCPG rs427121 chr17:3227385 C/G 0.000213 172 18.1 25.87 27.2 KM Plot
PCPG rs4280465 chr2:118546377 G/A 1.51E-5 178 24.85 28.8 11.65 KM Plot
PCPG rs4285335 chr6:156465816 C/G 0.000254 172 25.53 25.98 10.3 KM Plot
PCPG rs4289761 chr8:135505933 C/T 0.000389 178 32.03 25.53 23.88 KM Plot
PCPG rs4291799 chr13:37558968 G/A 0.00031 176 4.17 24.47 25.87 KM Plot
PCPG rs4303422 chr14:74578117 G/C 5.67E-7 175 25.4 27.43 7.4 KM Plot
PCPG rs430963 chr5:141184633 A/G 1.16E-6 178 23.57 29.57 24.53 KM Plot
PCPG rs4345013 chr22:27381837 T/C 0.000453 176 25.47 24.1 25.17 KM Plot